$ brew doctor
Result:
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Your XQuartz (2.7.8) is outdated
Please install XQuartz 2.7.9:
https://xquartz.macosforge.org
Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected dylibs:
/usr/local/lib/libgsl.19.dylib
/usr/local/lib/libgslcblas.0.dylib
Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected header files:
/usr/local/include/gsl/gsl_blas.h
/usr/local/include/gsl/gsl_blas_types.h
/usr/local/include/gsl/gsl_block.h
/usr/local/include/gsl/gsl_block_char.h
/usr/local/include/gsl/gsl_block_complex_double.h
/usr/local/include/gsl/gsl_block_complex_float.h
/usr/local/include/gsl/gsl_block_complex_long_double.h
/usr/local/include/gsl/gsl_block_double.h
/usr/local/include/gsl/gsl_block_float.h
/usr/local/include/gsl/gsl_block_int.h
/usr/local/include/gsl/gsl_block_long.h
/usr/local/include/gsl/gsl_block_long_double.h
/usr/local/include/gsl/gsl_block_short.h
/usr/local/include/gsl/gsl_block_uchar.h
/usr/local/include/gsl/gsl_block_uint.h
/usr/local/include/gsl/gsl_block_ulong.h
/usr/local/include/gsl/gsl_block_ushort.h
/usr/local/include/gsl/gsl_bspline.h
/usr/local/include/gsl/gsl_cblas.h
/usr/local/include/gsl/gsl_cdf.h
/usr/local/include/gsl/gsl_chebyshev.h
/usr/local/include/gsl/gsl_check_range.h
/usr/local/include/gsl/gsl_combination.h
/usr/local/include/gsl/gsl_complex.h
/usr/local/include/gsl/gsl_complex_math.h
/usr/local/include/gsl/gsl_const.h
/usr/local/include/gsl/gsl_const_cgs.h
/usr/local/include/gsl/gsl_const_cgsm.h
/usr/local/include/gsl/gsl_const_mks.h
/usr/local/include/gsl/gsl_const_mksa.h
/usr/local/include/gsl/gsl_const_num.h
/usr/local/include/gsl/gsl_deriv.h
/usr/local/include/gsl/gsl_dft_complex.h
/usr/local/include/gsl/gsl_dft_complex_float.h
/usr/local/include/gsl/gsl_dht.h
/usr/local/include/gsl/gsl_diff.h
/usr/local/include/gsl/gsl_eigen.h
/usr/local/include/gsl/gsl_errno.h
/usr/local/include/gsl/gsl_fft.h
/usr/local/include/gsl/gsl_fft_complex.h
/usr/local/include/gsl/gsl_fft_complex_float.h
/usr/local/include/gsl/gsl_fft_halfcomplex.h
/usr/local/include/gsl/gsl_fft_halfcomplex_float.h
/usr/local/include/gsl/gsl_fft_real.h
/usr/local/include/gsl/gsl_fft_real_float.h
/usr/local/include/gsl/gsl_fit.h
/usr/local/include/gsl/gsl_heapsort.h
/usr/local/include/gsl/gsl_histogram.h
/usr/local/include/gsl/gsl_histogram2d.h
/usr/local/include/gsl/gsl_ieee_utils.h
/usr/local/include/gsl/gsl_inline.h
/usr/local/include/gsl/gsl_integration.h
/usr/local/include/gsl/gsl_interp.h
/usr/local/include/gsl/gsl_interp2d.h
/usr/local/include/gsl/gsl_linalg.h
/usr/local/include/gsl/gsl_machine.h
/usr/local/include/gsl/gsl_math.h
/usr/local/include/gsl/gsl_matrix.h
/usr/local/include/gsl/gsl_matrix_char.h
/usr/local/include/gsl/gsl_matrix_complex_double.h
/usr/local/include/gsl/gsl_matrix_complex_float.h
/usr/local/include/gsl/gsl_matrix_complex_long_double.h
/usr/local/include/gsl/gsl_matrix_double.h
/usr/local/include/gsl/gsl_matrix_float.h
/usr/local/include/gsl/gsl_matrix_int.h
/usr/local/include/gsl/gsl_matrix_long.h
/usr/local/include/gsl/gsl_matrix_long_double.h
/usr/local/include/gsl/gsl_matrix_short.h
/usr/local/include/gsl/gsl_matrix_uchar.h
/usr/local/include/gsl/gsl_matrix_uint.h
/usr/local/include/gsl/gsl_matrix_ulong.h
/usr/local/include/gsl/gsl_matrix_ushort.h
/usr/local/include/gsl/gsl_message.h
/usr/local/include/gsl/gsl_min.h
/usr/local/include/gsl/gsl_minmax.h
/usr/local/include/gsl/gsl_mode.h
/usr/local/include/gsl/gsl_monte.h
/usr/local/include/gsl/gsl_monte_miser.h
/usr/local/include/gsl/gsl_monte_plain.h
/usr/local/include/gsl/gsl_monte_vegas.h
/usr/local/include/gsl/gsl_multifit.h
/usr/local/include/gsl/gsl_multifit_nlin.h
/usr/local/include/gsl/gsl_multilarge.h
/usr/local/include/gsl/gsl_multimin.h
/usr/local/include/gsl/gsl_multiroots.h
/usr/local/include/gsl/gsl_multiset.h
/usr/local/include/gsl/gsl_nan.h
/usr/local/include/gsl/gsl_ntuple.h
/usr/local/include/gsl/gsl_odeiv.h
/usr/local/include/gsl/gsl_odeiv2.h
/usr/local/include/gsl/gsl_permutation.h
/usr/local/include/gsl/gsl_permute.h
/usr/local/include/gsl/gsl_permute_char.h
/usr/local/include/gsl/gsl_permute_complex_double.h
/usr/local/include/gsl/gsl_permute_complex_float.h
/usr/local/include/gsl/gsl_permute_complex_long_double.h
/usr/local/include/gsl/gsl_permute_double.h
/usr/local/include/gsl/gsl_permute_float.h
/usr/local/include/gsl/gsl_permute_int.h
/usr/local/include/gsl/gsl_permute_long.h
/usr/local/include/gsl/gsl_permute_long_double.h
/usr/local/include/gsl/gsl_permute_short.h
/usr/local/include/gsl/gsl_permute_uchar.h
/usr/local/include/gsl/gsl_permute_uint.h
/usr/local/include/gsl/gsl_permute_ulong.h
/usr/local/include/gsl/gsl_permute_ushort.h
/usr/local/include/gsl/gsl_permute_vector.h
/usr/local/include/gsl/gsl_permute_vector_char.h
/usr/local/include/gsl/gsl_permute_vector_complex_double.h
/usr/local/include/gsl/gsl_permute_vector_complex_float.h
/usr/local/include/gsl/gsl_permute_vector_complex_long_double.h
/usr/local/include/gsl/gsl_permute_vector_double.h
/usr/local/include/gsl/gsl_permute_vector_float.h
/usr/local/include/gsl/gsl_permute_vector_int.h
/usr/local/include/gsl/gsl_permute_vector_long.h
/usr/local/include/gsl/gsl_permute_vector_long_double.h
/usr/local/include/gsl/gsl_permute_vector_short.h
/usr/local/include/gsl/gsl_permute_vector_uchar.h
/usr/local/include/gsl/gsl_permute_vector_uint.h
/usr/local/include/gsl/gsl_permute_vector_ulong.h
/usr/local/include/gsl/gsl_permute_vector_ushort.h
/usr/local/include/gsl/gsl_poly.h
/usr/local/include/gsl/gsl_pow_int.h
/usr/local/include/gsl/gsl_precision.h
/usr/local/include/gsl/gsl_qrng.h
/usr/local/include/gsl/gsl_randist.h
/usr/local/include/gsl/gsl_rng.h
/usr/local/include/gsl/gsl_roots.h
/usr/local/include/gsl/gsl_rstat.h
/usr/local/include/gsl/gsl_sf.h
/usr/local/include/gsl/gsl_sf_airy.h
/usr/local/include/gsl/gsl_sf_bessel.h
/usr/local/include/gsl/gsl_sf_clausen.h
/usr/local/include/gsl/gsl_sf_coulomb.h
/usr/local/include/gsl/gsl_sf_coupling.h
/usr/local/include/gsl/gsl_sf_dawson.h
/usr/local/include/gsl/gsl_sf_debye.h
/usr/local/include/gsl/gsl_sf_dilog.h
/usr/local/include/gsl/gsl_sf_elementary.h
/usr/local/include/gsl/gsl_sf_ellint.h
/usr/local/include/gsl/gsl_sf_elljac.h
/usr/local/include/gsl/gsl_sf_erf.h
/usr/local/include/gsl/gsl_sf_exp.h
/usr/local/include/gsl/gsl_sf_expint.h
/usr/local/include/gsl/gsl_sf_fermi_dirac.h
/usr/local/include/gsl/gsl_sf_gamma.h
/usr/local/include/gsl/gsl_sf_gegenbauer.h
/usr/local/include/gsl/gsl_sf_hyperg.h
/usr/local/include/gsl/gsl_sf_laguerre.h
/usr/local/include/gsl/gsl_sf_lambert.h
/usr/local/include/gsl/gsl_sf_legendre.h
/usr/local/include/gsl/gsl_sf_log.h
/usr/local/include/gsl/gsl_sf_mathieu.h
/usr/local/include/gsl/gsl_sf_pow_int.h
/usr/local/include/gsl/gsl_sf_psi.h
/usr/local/include/gsl/gsl_sf_result.h
/usr/local/include/gsl/gsl_sf_synchrotron.h
/usr/local/include/gsl/gsl_sf_transport.h
/usr/local/include/gsl/gsl_sf_trig.h
/usr/local/include/gsl/gsl_sf_zeta.h
/usr/local/include/gsl/gsl_siman.h
/usr/local/include/gsl/gsl_sort.h
/usr/local/include/gsl/gsl_sort_char.h
/usr/local/include/gsl/gsl_sort_double.h
/usr/local/include/gsl/gsl_sort_float.h
/usr/local/include/gsl/gsl_sort_int.h
/usr/local/include/gsl/gsl_sort_long.h
/usr/local/include/gsl/gsl_sort_long_double.h
/usr/local/include/gsl/gsl_sort_short.h
/usr/local/include/gsl/gsl_sort_uchar.h
/usr/local/include/gsl/gsl_sort_uint.h
/usr/local/include/gsl/gsl_sort_ulong.h
/usr/local/include/gsl/gsl_sort_ushort.h
/usr/local/include/gsl/gsl_sort_vector.h
/usr/local/include/gsl/gsl_sort_vector_char.h
/usr/local/include/gsl/gsl_sort_vector_double.h
/usr/local/include/gsl/gsl_sort_vector_float.h
/usr/local/include/gsl/gsl_sort_vector_int.h
/usr/local/include/gsl/gsl_sort_vector_long.h
/usr/local/include/gsl/gsl_sort_vector_long_double.h
/usr/local/include/gsl/gsl_sort_vector_short.h
/usr/local/include/gsl/gsl_sort_vector_uchar.h
/usr/local/include/gsl/gsl_sort_vector_uint.h
/usr/local/include/gsl/gsl_sort_vector_ulong.h
/usr/local/include/gsl/gsl_sort_vector_ushort.h
/usr/local/include/gsl/gsl_spblas.h
/usr/local/include/gsl/gsl_specfunc.h
/usr/local/include/gsl/gsl_splinalg.h
/usr/local/include/gsl/gsl_spline.h
/usr/local/include/gsl/gsl_spline2d.h
/usr/local/include/gsl/gsl_spmatrix.h
/usr/local/include/gsl/gsl_statistics.h
/usr/local/include/gsl/gsl_statistics_char.h
/usr/local/include/gsl/gsl_statistics_double.h
/usr/local/include/gsl/gsl_statistics_float.h
/usr/local/include/gsl/gsl_statistics_int.h
/usr/local/include/gsl/gsl_statistics_long.h
/usr/local/include/gsl/gsl_statistics_long_double.h
/usr/local/include/gsl/gsl_statistics_short.h
/usr/local/include/gsl/gsl_statistics_uchar.h
/usr/local/include/gsl/gsl_statistics_uint.h
/usr/local/include/gsl/gsl_statistics_ulong.h
/usr/local/include/gsl/gsl_statistics_ushort.h
/usr/local/include/gsl/gsl_sum.h
/usr/local/include/gsl/gsl_sys.h
/usr/local/include/gsl/gsl_test.h
/usr/local/include/gsl/gsl_types.h
/usr/local/include/gsl/gsl_vector.h
/usr/local/include/gsl/gsl_vector_char.h
/usr/local/include/gsl/gsl_vector_complex.h
/usr/local/include/gsl/gsl_vector_complex_double.h
/usr/local/include/gsl/gsl_vector_complex_float.h
/usr/local/include/gsl/gsl_vector_complex_long_double.h
/usr/local/include/gsl/gsl_vector_double.h
/usr/local/include/gsl/gsl_vector_float.h
/usr/local/include/gsl/gsl_vector_int.h
/usr/local/include/gsl/gsl_vector_long.h
/usr/local/include/gsl/gsl_vector_long_double.h
/usr/local/include/gsl/gsl_vector_short.h
/usr/local/include/gsl/gsl_vector_uchar.h
/usr/local/include/gsl/gsl_vector_uint.h
/usr/local/include/gsl/gsl_vector_ulong.h
/usr/local/include/gsl/gsl_vector_ushort.h
/usr/local/include/gsl/gsl_version.h
/usr/local/include/gsl/gsl_wavelet.h
/usr/local/include/gsl/gsl_wavelet2d.h
/usr/local/include/node/android-ifaddrs.h
/usr/local/include/node/ares.h
/usr/local/include/node/ares_version.h
/usr/local/include/node/libplatform/libplatform.h
/usr/local/include/node/nameser.h
/usr/local/include/node/node.h
/usr/local/include/node/node_buffer.h
/usr/local/include/node/node_internals.h
/usr/local/include/node/node_object_wrap.h
/usr/local/include/node/node_version.h
/usr/local/include/node/openssl/aes.h
/usr/local/include/node/openssl/archs/aix-gcc/opensslconf.h
/usr/local/include/node/openssl/archs/aix64-gcc/opensslconf.h
/usr/local/include/node/openssl/archs/BSD-x86/opensslconf.h
/usr/local/include/node/openssl/archs/BSD-x86_64/opensslconf.h
/usr/local/include/node/openssl/archs/darwin-i386-cc/opensslconf.h
/usr/local/include/node/openssl/archs/darwin64-x86_64-cc/opensslconf.h
/usr/local/include/node/openssl/archs/linux-aarch64/opensslconf.h
/usr/local/include/node/openssl/archs/linux-armv4/opensslconf.h
/usr/local/include/node/openssl/archs/linux-elf/opensslconf.h
/usr/local/include/node/openssl/archs/linux-ppc/opensslconf.h
/usr/local/include/node/openssl/archs/linux-ppc64/opensslconf.h
/usr/local/include/node/openssl/archs/linux-x32/opensslconf.h
/usr/local/include/node/openssl/archs/linux-x86_64/opensslconf.h
/usr/local/include/node/openssl/archs/solaris-x86-gcc/opensslconf.h
/usr/local/include/node/openssl/archs/solaris64-x86_64-gcc/opensslconf.h
/usr/local/include/node/openssl/archs/VC-WIN32/opensslconf.h
/usr/local/include/node/openssl/archs/VC-WIN64A/opensslconf.h
/usr/local/include/node/openssl/asn1.h
/usr/local/include/node/openssl/asn1_mac.h
/usr/local/include/node/openssl/asn1t.h
/usr/local/include/node/openssl/bio.h
/usr/local/include/node/openssl/blowfish.h
/usr/local/include/node/openssl/bn.h
/usr/local/include/node/openssl/buffer.h
/usr/local/include/node/openssl/camellia.h
/usr/local/include/node/openssl/cast.h
/usr/local/include/node/openssl/cmac.h
/usr/local/include/node/openssl/cms.h
/usr/local/include/node/openssl/comp.h
/usr/local/include/node/openssl/conf.h
/usr/local/include/node/openssl/conf_api.h
/usr/local/include/node/openssl/crypto.h
/usr/local/include/node/openssl/des.h
/usr/local/include/node/openssl/des_old.h
/usr/local/include/node/openssl/dh.h
/usr/local/include/node/openssl/dsa.h
/usr/local/include/node/openssl/dso.h
/usr/local/include/node/openssl/dtls1.h
/usr/local/include/node/openssl/e_os2.h
/usr/local/include/node/openssl/ebcdic.h
/usr/local/include/node/openssl/ec.h
/usr/local/include/node/openssl/ecdh.h
/usr/local/include/node/openssl/ecdsa.h
/usr/local/include/node/openssl/engine.h
/usr/local/include/node/openssl/err.h
/usr/local/include/node/openssl/evp.h
/usr/local/include/node/openssl/hmac.h
/usr/local/include/node/openssl/idea.h
/usr/local/include/node/openssl/krb5_asn.h
/usr/local/include/node/openssl/kssl.h
/usr/local/include/node/openssl/lhash.h
/usr/local/include/node/openssl/md4.h
/usr/local/include/node/openssl/md5.h
/usr/local/include/node/openssl/mdc2.h
/usr/local/include/node/openssl/modes.h
/usr/local/include/node/openssl/obj_mac.h
/usr/local/include/node/openssl/objects.h
/usr/local/include/node/openssl/ocsp.h
/usr/local/include/node/openssl/opensslconf.h
/usr/local/include/node/openssl/opensslv.h
/usr/local/include/node/openssl/ossl_typ.h
/usr/local/include/node/openssl/pem.h
/usr/local/include/node/openssl/pem2.h
/usr/local/include/node/openssl/pkcs12.h
/usr/local/include/node/openssl/pkcs7.h
/usr/local/include/node/openssl/pqueue.h
/usr/local/include/node/openssl/rand.h
/usr/local/include/node/openssl/rc2.h
/usr/local/include/node/openssl/rc4.h
/usr/local/include/node/openssl/ripemd.h
/usr/local/include/node/openssl/rsa.h
/usr/local/include/node/openssl/safestack.h
/usr/local/include/node/openssl/seed.h
/usr/local/include/node/openssl/sha.h
/usr/local/include/node/openssl/srp.h
/usr/local/include/node/openssl/srtp.h
/usr/local/include/node/openssl/ssl.h
/usr/local/include/node/openssl/ssl2.h
/usr/local/include/node/openssl/ssl23.h
/usr/local/include/node/openssl/ssl3.h
/usr/local/include/node/openssl/stack.h
/usr/local/include/node/openssl/symhacks.h
/usr/local/include/node/openssl/tls1.h
/usr/local/include/node/openssl/ts.h
/usr/local/include/node/openssl/txt_db.h
/usr/local/include/node/openssl/ui.h
/usr/local/include/node/openssl/ui_compat.h
/usr/local/include/node/openssl/whrlpool.h
/usr/local/include/node/openssl/x509.h
/usr/local/include/node/openssl/x509_vfy.h
/usr/local/include/node/openssl/x509v3.h
/usr/local/include/node/pthread-fixes.h
/usr/local/include/node/stdint-msvc2008.h
/usr/local/include/node/tree.h
/usr/local/include/node/uv-aix.h
/usr/local/include/node/uv-bsd.h
/usr/local/include/node/uv-darwin.h
/usr/local/include/node/uv-errno.h
/usr/local/include/node/uv-linux.h
/usr/local/include/node/uv-sunos.h
/usr/local/include/node/uv-threadpool.h
/usr/local/include/node/uv-unix.h
/usr/local/include/node/uv-version.h
/usr/local/include/node/uv-win.h
/usr/local/include/node/uv.h
/usr/local/include/node/v8-debug.h
/usr/local/include/node/v8-platform.h
/usr/local/include/node/v8-profiler.h
/usr/local/include/node/v8-testing.h
/usr/local/include/node/v8-util.h
/usr/local/include/node/v8-version.h
/usr/local/include/node/v8.h
/usr/local/include/node/v8config.h
/usr/local/include/node/zconf.h
/usr/local/include/node/zlib.h
Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected .la files:
/usr/local/lib/libgsl.la
/usr/local/lib/libgslcblas.la
Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected .pc files:
/usr/local/lib/pkgconfig/gsl.pc
Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected static libraries:
/usr/local/lib/libgsl.a
/usr/local/lib/libgslcblas.a
Warning: You are using OS X 10.12.
We do not provide support for this pre-release version.
You may encounter build failures or other breakages.
Please create pull-requests instead of filing issues.
Warning: Your Xcode (7.3.1) is outdated
Please update to Xcode 8.0.
Xcode can be updated from
https://developer.apple.com/xcode/downloads/
If 8.0 is installed, you may need to:
sudo xcode-select --switch /path/to/Xcode-beta.app
Warning: Broken symlinks were found. Remove them with `brew prune`:
/usr/local/share/man/man8/prlexec.8
Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:
brew install python
Run `brew missing` for more details.